```{include} ../README.md
:end-line: 5
```

# DECIPHER: Spatial-omics data embedding and analysis
```{eval-rst}
.. .. image:: _static/DECIPHER.png
..    :width: 80
..    :alt: DECIPHER icon
..    :align: right
```

``cell-decipher`` package implements the **DECIPHER** model ([Github](https://github.com/gao-lab/DECIPHER)).

```{eval-rst}
.. image:: _static/Model.png
   :width: 600
   :alt: Model architecture
```


## Getting started with DECIPHER
To get started, check out our **{doc}`installation guide <install>`** and **{doc}`tutorials <tutorials>`**.


## Manuscript

Please check our manuscript for more details:

[TBD]()


```{eval-rst}
.. toctree::
   :maxdepth: 2
   :caption: Contents:

   install
   tutorials
   api
   release
   credits

```

## Contributing
We are happy about your contributions! Please submit Issue or Pull requests on our [Github](https://github.com/gao-lab/DECIPHER). We think your contribution will make a big difference to community!