Installation guide

PyPI

We recommend to install cell-decipher to a new conda environment with RAPIDS dependencies.

mamba create -n decipher -c conda-forge -c rapidsai -c nvidia python=3.11 rapids=25.06 'cuda-version>=12.0,<=12.8' -y && conda activate decipher
pip install cell-decipher
install_pyg_dependencies

Note

RAPIDS is only available at NVIDIA Volta or newer GPU with specific driver version. Please check official website for more details.

RAPIDS is not coercive, but it is highly recommended to install it for acceleration. If you do not want to install it or meet unexpected errors, just run:

mamba create -n decipher python==3.11 -c conda-forge -y && conda activate decipher
pip install cell-decipher
install_pyg_dependencies

Docker

Build docker image from Dockerfile or pull the latest image from Docker Hub by:

docker pull huhansan666666/decipher:latest